Create a cooler from genomic pairs and bins
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
contacts{:bash}
:file
Path to contacts (e.g. read pairs, pairix, tabix) file.
index{:bash}
Path to index file of the contacts.
meta2{:bash}
chromsizes{:bash}
Path to a chromsizes file.
mode{:bash}
:integer
Input mode for cooler cload - one of pairs, pairix, tabix
cool_bin{:bash}
Bins size in bp
cool{:bash}
*.cool{:bash}
Output COOL file path
*.cool
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Sparse binary format for genomic interaction matrices
