Read CEL files into an ExpressionSet and generate a matrix
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
samplesheet{:bash}
:file
CSV or TSV format sample sheet with sample metadata and CEL file names
celfiles_dir{:bash}
:list
Path to a directory containing CEL files
*.{CEL,CEL.gz}
meta2{:bash}
description{:bash}
Optional description file in MIAME format
rds{:bash}
*.rds{:bash}
Serialised ExpressionSet object
*.rds
expression{:bash}
*matrix.tsv{:bash}
TSV-format intensity matrix
matrix.tsv
annotation{:bash}
*.annotation.tsv{:bash}
TSV-format annotation table
*.annotation.tsv
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Methods for Affymetrix Oligonucleotide Arrays
