nf-core/configs: unibe_ibu
University of Bern, Interfaculty Bioinformatics Unit cluster profile
UNIBE_IBU Configuration
Configuration file to run nf-core pipelines on the cluster of the Interfaculty Bioinformatics Unit of the University of Bern.
To use, run the pipeline with -profile unibe_ibu. This will download and launch the profile.config which has been pre-configured with a setup suitable for the IBU cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline. This requires a local installation of singularity. It is easiest to submit the pipeline from a compute node. Once the image is cached, you can also submit from the login node.
Config file
params {
config_profile_description = "University of Bern, Interfaculty Bioinformatics Unit cluster profile"
config_profile_contact = "irene.keller@dbmr.unibe.ch; info@bioinformatics.unibe.ch"
config_profile_url = "https://www.bioinformatics.unibe.ch/"
max_memory = 500.GB
max_cpus = 128
max_time = 240.h
}
process {
resourceLimits = [
memory: 500.GB,
cpus: 128,
time: 240.h
]
executor = "slurm"
maxRetries = 2
beforeScript = 'mkdir -p ./tmp/ && export TMPDIR=./tmp/'
}
executor {
queueSize = 30
}
singularity {
enabled = true
autoMounts = true
}
executor
slurm
contact
